SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 19)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1196903	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs183578	0.89[JPT][hapmap]
rs240569	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs471772	0.81[ASN][1000 genomes]
rs495330	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs528941	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs551292	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs582378	0.81[ASN][1000 genomes]
rs582580	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs586616	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs596321	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs600868	0.81[ASN][1000 genomes]
rs602404	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs615709	0.85[CHB][hapmap]
rs650506	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs654772	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs660165	0.87[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs664226	0.94[ASW][hapmap];0.87[CHB][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap];0.95[LWK][hapmap];0.88[MKK][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs674981	0.88[CHB][hapmap];0.90[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
SNX15	Distal transcriptional regulation
TM7SF2	Distal transcriptional regulation
ARL2	Distal transcriptional regulation
SAC3D1	Distal transcriptional regulation
ENSG00000255173	Distal transcriptional regulation
ZNHIT2	Distal transcriptional regulation
ARL2	RNA binding protein mediated regulation
SNX15	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 1)