SNP Report
Basic Infomation
| Name | rs6604969 dbSNP |
|---|---|
| Location | chr:1,1041786 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 67)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1105065 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11260592 | 0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11260593 | 0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11260594 | 0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11579015 | 0.98[ASN][1000 genomes] |
| rs11579922 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11581598 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11586034 | 0.98[ASN][1000 genomes] |
| rs11586617 | 0.94[ASN][1000 genomes] |
| rs11587937 | 0.94[ASN][1000 genomes] |
| rs11590188 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11807848 | 0.86[ASN][1000 genomes] |
| rs12567697 | 0.97[ASN][1000 genomes] |
| rs12567855 | 0.88[ASN][1000 genomes] |
| rs12723165 | 0.96[ASN][1000 genomes] |
| rs12726255 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12726341 | 0.97[ASN][1000 genomes] |
| rs12729537 | 1.00[ASN][1000 genomes] |
| rs12733365 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12736814 | 0.89[ASN][1000 genomes] |
| rs12743678 | 0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12748370 | 0.91[ASN][1000 genomes] |
| rs12751333 | 0.83[ASN][1000 genomes] |
| rs12754457 | 0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12755848 | 0.97[ASN][1000 genomes] |
| rs12757754 | 0.91[ASN][1000 genomes] |
| rs17160824 | 0.94[ASN][1000 genomes] |
| rs17160826 | 0.91[ASN][1000 genomes] |
| rs34381538 | 0.88[ASN][1000 genomes] |
| rs34530354 | 0.87[ASN][1000 genomes] |
| rs34658689 | 0.97[ASN][1000 genomes] |
| rs34808604 | 0.97[ASN][1000 genomes] |
| rs34820586 | 0.98[ASN][1000 genomes] |
| rs34895099 | 0.96[ASN][1000 genomes] |
| rs35207507 | 0.87[ASN][1000 genomes] |
| rs35300397 | 0.92[ASN][1000 genomes] |
| rs35704567 | 0.97[ASN][1000 genomes] |
| rs35823915 | 0.92[ASN][1000 genomes] |
| rs4970354 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4970355 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4970356 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4970405 | 0.80[ASN][1000 genomes] |
| rs4970406 | 0.98[ASN][1000 genomes] |
| rs4970407 | 0.98[ASN][1000 genomes] |
| rs4970409 | 0.97[ASN][1000 genomes] |
| rs4970410 | 0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4970411 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4970412 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs57107904 | 0.87[AMR][1000 genomes] |
| rs57879151 | 0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6604968 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6656379 | 0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs66622470 | 0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6664124 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6666280 | 0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6671356 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs66868065 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6687681 | 0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6697379 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6702072 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71628940 | 0.95[ASN][1000 genomes] |
| rs7518814 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7534657 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7538862 | 0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7556082 | 0.88[ASN][1000 genomes] |
| rs9329410 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9329411 | 0.85[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C1orf159 | Proximal transcriptional regulation |
| RNF223 | Distal transcriptional regulation |
| C1orf159 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014