SNP Report
Basic Infomation
| Name | rs6583800 dbSNP |
|---|---|
| Location | chr:10,93814016 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs35412677 | 0.89[AMR][1000 genomes] |
| rs57762009 | 0.89[AMR][1000 genomes] |
| rs58708663 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59509997 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59582715 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7074872 | 0.89[AMR][1000 genomes] |
| rs7075257 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7084059 | 0.87[LWK][hapmap];0.93[YRI][hapmap] |
| rs7084837 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7096690 | 0.89[AMR][1000 genomes] |
| rs73314344 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73316068 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73316069 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73316082 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73318015 | 0.89[AMR][1000 genomes] |
| rs73318028 | 0.89[AMR][1000 genomes] |
| rs7907888 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7920742 | 0.81[ASW][hapmap] |
| rs9919492 | 0.82[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CPEB3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014