SNP Report
Basic Infomation
| Name | rs58708663 dbSNP |
|---|---|
| Location | chr:10,93885346 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs35412677 | 0.89[AMR][1000 genomes] |
| rs57762009 | 0.89[AMR][1000 genomes] |
| rs59509997 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59582715 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6583800 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7074872 | 0.89[AMR][1000 genomes] |
| rs7075257 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7084837 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7096690 | 0.89[AMR][1000 genomes] |
| rs73314344 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73316068 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73316069 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73316082 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73318015 | 0.81[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs73318028 | 0.89[AMR][1000 genomes] |
| rs7907888 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CPEB3 | Distal transcriptional regulation |
| MARCH5 | Distal transcriptional regulation |
| CPEB3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014