SNP Report
Basic Infomation
| Name | rs6470739 dbSNP |
|---|---|
| Location | chr:8,130570669 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10956482 | 0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12548063 | 0.85[EUR][1000 genomes] |
| rs12677963 | 0.82[CHD][hapmap] |
| rs1594774 | 0.85[EUR][1000 genomes] |
| rs16904119 | 0.85[EUR][1000 genomes] |
| rs2043404 | 0.85[EUR][1000 genomes] |
| rs4319050 | 0.85[EUR][1000 genomes] |
| rs61453473 | 0.85[EUR][1000 genomes] |
| rs6470742 | 0.82[CEU][hapmap];0.82[CHD][hapmap];0.87[MEX][hapmap];0.84[EUR][1000 genomes] |
| rs6982371 | 0.81[EUR][1000 genomes] |
| rs6982553 | 0.85[EUR][1000 genomes] |
| rs7000289 | 0.81[CHD][hapmap] |
| rs7000320 | 0.85[EUR][1000 genomes] |
| rs7000372 | 0.87[MEX][hapmap];0.84[EUR][1000 genomes] |
| rs7006214 | 0.85[EUR][1000 genomes] |
| rs7011870 | 0.84[EUR][1000 genomes] |
| rs7014560 | 0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs72609887 | 0.87[EUR][1000 genomes] |
| rs7829245 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7831493 | 0.83[EUR][1000 genomes] |
| rs7840067 | 0.85[EUR][1000 genomes] |
| rs7846327 | 0.82[CHD][hapmap];0.96[MEX][hapmap];0.85[EUR][1000 genomes] |
| rs892350 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs892351 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9642890 | 0.85[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MYC | Distal transcriptional regulation |
| CCDC26 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014