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rVarBase
SNP Report
Basic Infomation
Name
rs62142478  
dbSNP
Location
chr:2,65482116
Allele
G/C
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs268858
0.87[ASN][1000 genomes]
rs3771100
0.95[EUR][1000 genomes]
rs62139060
0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62139085
0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7246
0.87[AFR][1000 genomes];0.95[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
SPRED2
Distal transcriptional regulation
ACTR2
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)