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rVarBase
SNP Report
Basic Infomation
Name
rs62139085  
dbSNP
Location
chr:2,65507913
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 4)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs3771100
0.93[EUR][1000 genomes]
rs62139060
0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62142478
0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7246
0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
SPRED2
Distal transcriptional regulation
ENSG00000204929
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)