SNP Report
Basic Infomation
| Name | rs61990084 dbSNP |
|---|---|
| Location | chr:14,68067556 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10129995 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12588931 | 0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs45474396 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4899212 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61990083 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs61990086 | 0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs61990087 | 0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61990109 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs61990110 | 0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs61990111 | 0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs61990112 | 0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs61990113 | 0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs61990114 | 0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs61990115 | 0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs61990116 | 0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs61990117 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs6573785 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs7146307 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs8010574 | 0.90[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PIGH | Proximal transcriptional regulation |
| RDH11 | Distal transcriptional regulation |
| ARG2 | Distal transcriptional regulation |
| PLEKHH1 | Distal transcriptional regulation |
| VTI1B | Distal transcriptional regulation |
| ENSG00000201529 | Distal transcriptional regulation |
| ENSG00000266117 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014