SNP Report
Basic Infomation
| Name | rs12588931 dbSNP |
|---|---|
| Location | chr:14,68070673 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10129995 | 0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4899212 | 0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs61990084 | 0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs61990086 | 0.96[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs61990087 | 0.96[AFR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs61990109 | 0.92[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs61990110 | 0.96[AFR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs61990111 | 0.96[AFR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs61990112 | 0.94[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs61990113 | 0.94[AFR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs61990114 | 0.94[AFR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs61990115 | 0.94[AFR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs61990116 | 0.94[AFR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs61990117 | 1.00[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7146307 | 0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PIGH | Proximal transcriptional regulation |
| ENSG00000259502 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014