SNP Report
Basic Infomation
| Name | rs61872688 dbSNP |
|---|---|
| Location | chr:10,101273546 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 31)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10748783 | 0.80[ASN][1000 genomes] |
| rs10883358 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10883360 | 0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10883361 | 0.82[ASN][1000 genomes] |
| rs10883365 | 0.81[ASN][1000 genomes] |
| rs10883366 | 0.81[ASN][1000 genomes] |
| rs10883367 | 0.81[ASN][1000 genomes] |
| rs10883370 | 0.81[ASN][1000 genomes] |
| rs10883371 | 0.81[ASN][1000 genomes] |
| rs10883373 | 0.81[ASN][1000 genomes] |
| rs11190134 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11190140 | 0.81[ASN][1000 genomes] |
| rs11190141 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1548962 | 0.81[ASN][1000 genomes] |
| rs1548963 | 0.81[ASN][1000 genomes] |
| rs1548964 | 0.81[ASN][1000 genomes] |
| rs4129132 | 0.81[ASN][1000 genomes] |
| rs4129133 | 0.81[ASN][1000 genomes] |
| rs4129134 | 0.81[ASN][1000 genomes] |
| rs4409764 | 0.81[ASN][1000 genomes] |
| rs4919342 | 0.89[ASN][1000 genomes] |
| rs6584281 | 0.81[ASN][1000 genomes] |
| rs6584282 | 0.81[ASN][1000 genomes] |
| rs6584283 | 0.81[ASN][1000 genomes] |
| rs7077040 | 0.90[ASN][1000 genomes] |
| rs7085798 | 0.81[ASN][1000 genomes] |
| rs7095491 | 0.92[ASN][1000 genomes] |
| rs7893840 | 0.81[ASN][1000 genomes] |
| rs7908704 | 0.81[ASN][1000 genomes] |
| rs7916751 | 0.81[ASN][1000 genomes] |
| rs7917446 | 0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000228778 | Distal transcriptional regulation |
| ENSG00000257582 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014