SNP Report

Basic Infomation

Name	rs11190134 dbSNP
Location	chr:10,101282200
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 33)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10748783	0.82[ASN][1000 genomes]
rs10883358	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10883360	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10883361	0.83[ASN][1000 genomes]
rs10883365	0.87[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs10883366	0.83[ASN][1000 genomes]
rs10883367	0.87[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs10883370	0.82[ASN][1000 genomes]
rs10883371	0.87[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs10883373	0.87[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs11190140	0.87[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs11190141	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1332099	0.87[CHB][hapmap]
rs1332100	0.81[JPT][hapmap]
rs1548962	0.87[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs1548963	0.82[ASN][1000 genomes]
rs1548964	0.87[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs4129132	0.87[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs4129133	0.83[ASN][1000 genomes]
rs4129134	0.83[ASN][1000 genomes]
rs4409764	0.87[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs4919342	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs61872688	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6584281	0.82[ASN][1000 genomes]
rs6584282	0.83[ASN][1000 genomes]
rs6584283	0.87[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs7077040	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs7085798	0.83[ASN][1000 genomes]
rs7095491	0.95[CHB][hapmap];0.87[CHD][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs7893840	0.82[ASN][1000 genomes]
rs7908704	0.82[ASN][1000 genomes]
rs7916751	0.83[ASN][1000 genomes]
rs7917446	0.83[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000228778	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 5)

eQTL related gene	Source
HMGCR	SCAN
ZNF518A	SCAN
TRIM8	SCAN
LDB1	SCAN
PDZD7	SCAN