SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 10)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12481717	0.84[JPT][hapmap];0.81[EUR][1000 genomes]
rs1407256	0.81[CEU][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs4911248	0.85[JPT][hapmap]
rs4911249	0.82[JPT][hapmap]
rs4911250	0.81[CEU][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs6141766	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6141769	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73107865	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs748640	1.00[CHB][hapmap];0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8122731	0.83[AFR][1000 genomes]

rSNP related genes

Symbol	Regulation type
C20orf203	Distal transcriptional regulation
C20orf112	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 2)

eQTL related gene	Source
COMMD7	SCAN
PXMP4	SCAN