SNP Report
Basic Infomation
| Name | rs6104020 dbSNP |
|---|---|
| Location | chr:20,43753914 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13042449 | 0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2206887 | 0.81[ASW][hapmap] |
| rs2206889 | 0.81[ASW][hapmap] |
| rs4359712 | 0.81[ASW][hapmap] |
| rs6031991 | 0.81[GIH][hapmap];0.88[JPT][hapmap] |
| rs6032003 | 1.00[CHB][hapmap];0.91[ASN][1000 genomes] |
| rs6032007 | 1.00[CHB][hapmap];0.84[CHD][hapmap] |
| rs6032008 | 1.00[CHB][hapmap];0.84[CHD][hapmap] |
| rs6032073 | 0.81[ASW][hapmap] |
| rs6104017 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6104018 | 1.00[CHB][hapmap] |
| rs6104024 | 1.00[CHB][hapmap] |
| rs6124690 | 0.83[GIH][hapmap] |
| rs6130765 | 1.00[CHB][hapmap] |
| rs6130766 | 1.00[CHB][hapmap] |
| rs763058 | 0.81[GIH][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| WFDC12 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014