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rVarBase
SNP Report
Basic Infomation
Name
rs6104017  
dbSNP
Location
chr:20,43752168
Allele
T/A
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs13042449
0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6031991
0.88[JPT][hapmap]
rs6032003
1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs6032007
1.00[CHB][hapmap]
rs6032008
1.00[CHB][hapmap]
rs6104018
1.00[CHB][hapmap]
rs6104020
1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6104024
1.00[CHB][hapmap]
rs6130765
1.00[CHB][hapmap]
rs6130766
1.00[CHB][hapmap]
rSNP related genes
Symbol
Regulation type
WFDC12
Proximal transcriptional regulation
WFDC12
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)