SNP Report
Basic Infomation
| Name | rs6089208 dbSNP |
|---|---|
| Location | chr:20,30772844 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1002137 | 0.84[AFR][1000 genomes] |
| rs2143764 | 1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2295037 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs28396287 | 0.82[AFR][1000 genomes] |
| rs59705005 | 0.86[ASN][1000 genomes] |
| rs6087816 | 0.81[EUR][1000 genomes] |
| rs6087828 | 1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6089184 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6089194 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6089195 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6089197 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6089206 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6121350 | 0.80[AMR][1000 genomes] |
| rs6121351 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6121353 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6121356 | 0.82[ASN][1000 genomes] |
| rs6121360 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6121361 | 1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6121362 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6121363 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6121375 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6121376 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6121377 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6121381 | 0.83[AFR][1000 genomes] |
| rs733320 | 0.81[AFR][1000 genomes] |
| rs73906746 | 0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs910186 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TSPY26P | Distal transcriptional regulation |
| PLAGL2 | Distal transcriptional regulation |
| POFUT1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014