SNP Report
Basic Infomation
| Name | rs6058887 dbSNP |
|---|---|
| Location | chr:20,31371156 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10485500 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17123621 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17123657 | 1.00[EUR][1000 genomes] |
| rs57239875 | 0.86[EUR][1000 genomes] |
| rs57953392 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58164391 | 1.00[EUR][1000 genomes] |
| rs59447849 | 1.00[EUR][1000 genomes] |
| rs6057641 | 1.00[EUR][1000 genomes] |
| rs6057645 | 0.81[ASW][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes] |
| rs6119284 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6119285 | 1.00[TSI][hapmap] |
| rs6119955 | 0.92[YRI][hapmap];0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6119958 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6119962 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6119967 | 0.86[EUR][1000 genomes] |
| rs73255944 | 0.83[EUR][1000 genomes] |
| rs73255952 | 1.00[EUR][1000 genomes] |
| rs73258122 | 1.00[EUR][1000 genomes] |
| rs73258127 | 1.00[EUR][1000 genomes] |
| rs73258134 | 1.00[EUR][1000 genomes] |
| rs73258152 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73260141 | 1.00[EUR][1000 genomes] |
| rs73260176 | 1.00[EUR][1000 genomes] |
| rs73260178 | 1.00[EUR][1000 genomes] |
| rs7360212 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DNMT3B | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| BCDIN3D | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014