SNP Report
Basic Infomation
| Name | rs6057641 dbSNP |
|---|---|
| Location | chr:20,31355071 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10485500 | 1.00[EUR][1000 genomes] |
| rs17123621 | 1.00[EUR][1000 genomes] |
| rs17123657 | 1.00[EUR][1000 genomes] |
| rs57239875 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs57953392 | 1.00[EUR][1000 genomes] |
| rs58164391 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59447849 | 1.00[EUR][1000 genomes] |
| rs6058887 | 1.00[EUR][1000 genomes] |
| rs6119284 | 1.00[EUR][1000 genomes] |
| rs6119955 | 1.00[EUR][1000 genomes] |
| rs6119958 | 1.00[EUR][1000 genomes] |
| rs6119962 | 1.00[EUR][1000 genomes] |
| rs6119967 | 0.86[EUR][1000 genomes] |
| rs73255944 | 0.83[EUR][1000 genomes] |
| rs73255952 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73258122 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73258127 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73258134 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73258152 | 1.00[EUR][1000 genomes] |
| rs73260141 | 1.00[EUR][1000 genomes] |
| rs73260176 | 1.00[EUR][1000 genomes] |
| rs73260178 | 1.00[EUR][1000 genomes] |
| rs7360212 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| COMMD7 | Distal transcriptional regulation |
| DNMT3B | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014