SNP Report
Basic Infomation
| Name | rs6058875 dbSNP |
|---|---|
| Location | chr:20,31353790 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1003521 | 0.84[EUR][1000 genomes] |
| rs1007123 | 0.87[EUR][1000 genomes] |
| rs1007124 | 0.87[EUR][1000 genomes] |
| rs12329424 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1333469 | 0.84[EUR][1000 genomes] |
| rs1569686 | 0.83[EUR][1000 genomes] |
| rs1855349 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1883729 | 0.83[EUR][1000 genomes] |
| rs1883730 | 0.86[EUR][1000 genomes] |
| rs2018002 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2377667 | 0.86[EUR][1000 genomes] |
| rs2424899 | 0.87[EUR][1000 genomes] |
| rs2424903 | 0.87[EUR][1000 genomes] |
| rs2424904 | 0.84[EUR][1000 genomes] |
| rs2424909 | 0.84[EUR][1000 genomes] |
| rs4911107 | 0.84[EUR][1000 genomes] |
| rs4911110 | 0.81[EUR][1000 genomes] |
| rs4911255 | 0.84[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4911258 | 0.81[EUR][1000 genomes] |
| rs6058860 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6058868 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs6058869 | 0.87[EUR][1000 genomes] |
| rs6058874 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6058893 | 0.81[EUR][1000 genomes] |
| rs6087989 | 0.84[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6087990 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6087999 | 0.83[EUR][1000 genomes] |
| rs6119281 | 0.82[EUR][1000 genomes] |
| rs6141814 | 0.81[EUR][1000 genomes] |
| rs742630 | 0.87[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DNMT3B | Distal transcriptional regulation |
| COMMD7 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014