SNP Report
Basic Infomation
| Name | rs6058610 dbSNP |
|---|---|
| Location | chr:20,30860657 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1006916 | 1.00[EUR][1000 genomes] |
| rs59745045 | 1.00[EUR][1000 genomes] |
| rs59859452 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6057542 | 1.00[EUR][1000 genomes] |
| rs6057551 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6057563 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6057564 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6057580 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6057581 | 1.00[EUR][1000 genomes] |
| rs6057584 | 1.00[EUR][1000 genomes] |
| rs6058578 | 1.00[EUR][1000 genomes] |
| rs6058579 | 1.00[EUR][1000 genomes] |
| rs6058580 | 1.00[EUR][1000 genomes] |
| rs6058582 | 1.00[EUR][1000 genomes] |
| rs6058585 | 1.00[EUR][1000 genomes] |
| rs6058616 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6058617 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6058624 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6058647 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6058664 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6058695 | 1.00[EUR][1000 genomes] |
| rs6058696 | 1.00[EUR][1000 genomes] |
| rs6058697 | 1.00[EUR][1000 genomes] |
| rs6061214 | 1.00[EUR][1000 genomes] |
| rs6061215 | 1.00[EUR][1000 genomes] |
| rs6061219 | 1.00[EUR][1000 genomes] |
| rs60907087 | 1.00[EUR][1000 genomes] |
| rs73244991 | 1.00[EUR][1000 genomes] |
| rs7348695 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KIF3B | Proximal transcriptional regulation |
| KIF3B | Distal transcriptional regulation |
| ENSG00000264308 | Distal transcriptional regulation |
| ASXL1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014