SNP Report
Basic Infomation
| Name | rs60002366 dbSNP |
|---|---|
| Location | chr:12,40250173 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs4238078 | 0.89[ASN][1000 genomes] |
| rs4267135 | 0.89[ASN][1000 genomes] |
| rs4321021 | 0.89[ASN][1000 genomes] |
| rs4427625 | 0.89[ASN][1000 genomes] |
| rs4639999 | 0.89[ASN][1000 genomes] |
| rs4768181 | 0.89[ASN][1000 genomes] |
| rs4768182 | 0.89[ASN][1000 genomes] |
| rs56221715 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6581338 | 0.89[ASN][1000 genomes] |
| rs66924731 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67574032 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73103008 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73103024 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73103034 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73104960 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73104964 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73104976 | 0.93[EUR][1000 genomes] |
| rs73104985 | 0.93[EUR][1000 genomes] |
| rs73104987 | 0.93[EUR][1000 genomes] |
| rs73274668 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73276518 | 1.00[ASN][1000 genomes] |
| rs74086925 | 1.00[ASN][1000 genomes] |
| rs7969296 | 0.89[ASN][1000 genomes] |
| rs7975209 | 0.89[ASN][1000 genomes] |
| rs9645805 | 0.89[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C12orf40 | RNA binding protein mediated regulation |
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014