SNP Report
Basic Infomation
| Name | rs59892710 dbSNP |
|---|---|
| Location | chr:1,200672172 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 41)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs3207096 | 0.83[AFR][1000 genomes] |
| rs56849749 | 0.92[ASN][1000 genomes] |
| rs59172975 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59505940 | 0.92[ASN][1000 genomes] |
| rs59624172 | 0.91[AFR][1000 genomes] |
| rs60070641 | 0.83[AFR][1000 genomes] |
| rs60432871 | 0.92[ASN][1000 genomes] |
| rs61109704 | 0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61143976 | 0.83[AFR][1000 genomes] |
| rs6680058 | 0.91[AFR][1000 genomes] |
| rs73083253 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73083266 | 0.91[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs73084635 | 0.92[ASN][1000 genomes] |
| rs73084639 | 0.92[ASN][1000 genomes] |
| rs73084640 | 0.92[ASN][1000 genomes] |
| rs73084643 | 0.92[ASN][1000 genomes] |
| rs73084644 | 0.92[ASN][1000 genomes] |
| rs73084646 | 0.91[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs73084649 | 0.92[ASN][1000 genomes] |
| rs73084650 | 0.92[ASN][1000 genomes] |
| rs73084655 | 0.92[ASN][1000 genomes] |
| rs73084657 | 0.92[ASN][1000 genomes] |
| rs73084658 | 0.92[ASN][1000 genomes] |
| rs73084659 | 0.92[ASN][1000 genomes] |
| rs73084661 | 0.92[ASN][1000 genomes] |
| rs73084694 | 0.95[AFR][1000 genomes] |
| rs73084698 | 0.86[AFR][1000 genomes] |
| rs73086614 | 0.91[AFR][1000 genomes] |
| rs73086617 | 0.91[AFR][1000 genomes] |
| rs73086620 | 0.83[AFR][1000 genomes] |
| rs73086625 | 0.83[AFR][1000 genomes] |
| rs73086626 | 0.83[AFR][1000 genomes] |
| rs73086628 | 0.83[AFR][1000 genomes] |
| rs73086632 | 0.83[AFR][1000 genomes] |
| rs73086635 | 0.83[AFR][1000 genomes] |
| rs73086639 | 0.91[AFR][1000 genomes] |
| rs73086648 | 0.91[AFR][1000 genomes] |
| rs73086650 | 0.91[AFR][1000 genomes] |
| rs73086655 | 0.91[AFR][1000 genomes] |
| rs73086660 | 0.91[AFR][1000 genomes] |
| rs7519005 | 0.91[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000260088 | Distal transcriptional regulation |
| DDX59 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014