SNP Report
Basic Infomation
| Name | rs59172975 dbSNP |
|---|---|
| Location | chr:1,200672458 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1389643 | 0.96[AFR][1000 genomes] |
| rs1389644 | 0.96[AFR][1000 genomes] |
| rs2220820 | 0.96[AFR][1000 genomes] |
| rs2364686 | 0.96[AFR][1000 genomes] |
| rs56849749 | 0.88[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs59505940 | 0.96[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs59892710 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60064080 | 0.92[AFR][1000 genomes] |
| rs60432871 | 0.96[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs61109704 | 0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73083253 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73083266 | 0.83[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs73084635 | 0.96[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs73084639 | 0.96[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs73084640 | 0.96[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs73084643 | 0.82[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs73084644 | 0.92[ASN][1000 genomes] |
| rs73084646 | 0.83[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs73084649 | 0.96[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs73084650 | 0.96[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs73084655 | 0.88[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs73084657 | 0.96[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs73084658 | 0.96[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs73084659 | 0.88[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs73084661 | 0.96[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs73084681 | 0.96[AFR][1000 genomes] |
| rs73084685 | 0.96[AFR][1000 genomes] |
| rs73084687 | 0.96[AFR][1000 genomes] |
| rs73084692 | 0.96[AFR][1000 genomes] |
| rs73084693 | 0.85[AFR][1000 genomes] |
| rs73086620 | 0.83[AFR][1000 genomes] |
| rs731077 | 0.88[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000260088 | Distal transcriptional regulation |
| DDX59 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014