SNP Report
Basic Infomation
| Name | rs59790099 dbSNP |
|---|---|
| Location | chr:16,23869285 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10852256 | 0.94[ASN][1000 genomes] |
| rs11074582 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11074583 | 0.91[ASN][1000 genomes] |
| rs11074584 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11644103 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11646426 | 0.84[ASN][1000 genomes] |
| rs12443784 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12447916 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12928014 | 0.92[ASN][1000 genomes] |
| rs12928465 | 0.93[ASN][1000 genomes] |
| rs2106375 | 0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2106376 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2188355 | 0.93[ASN][1000 genomes] |
| rs3785403 | 0.93[ASN][1000 genomes] |
| rs3826260 | 0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs3826262 | 0.93[ASN][1000 genomes] |
| rs56046165 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs56061125 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7190426 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs72777933 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs72777934 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs72777936 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs73537014 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs8056879 | 0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRKCB | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014