SNP Report
Basic Infomation
| Name | rs597325 dbSNP |
|---|---|
| Location | chr:6,91002494 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs206913 | 0.87[CEU][hapmap];0.88[GIH][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes] |
| rs4706359 | 1.00[YRI][hapmap] |
| rs604912 | 1.00[CEU][hapmap];0.93[GIH][hapmap];0.88[LWK][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs614120 | 1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs619192 | 1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs639575 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs644940 | 1.00[CEU][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs654537 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs661713 | 1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs673780 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7754251 | 0.84[EUR][1000 genomes] |
| rs9294458 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| BACH2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014