SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 18)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs2256672	0.81[EUR][1000 genomes]
rs2474619	1.00[ASW][hapmap]
rs2501714	1.00[ASW][hapmap]
rs2655387	1.00[ASW][hapmap];0.82[CEU][hapmap]
rs370409	1.00[ASW][hapmap];0.82[CEU][hapmap]
rs597325	0.87[CEU][hapmap];0.88[GIH][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs604912	1.00[ASW][hapmap];0.87[CEU][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap];0.81[MEX][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs614120	0.87[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs618371	0.81[CEU][hapmap]
rs619192	0.87[CEU][hapmap];0.91[GIH][hapmap];0.85[JPT][hapmap];0.81[MEX][hapmap];0.91[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs639575	0.89[EUR][1000 genomes]
rs644940	0.87[CEU][hapmap];0.84[GIH][hapmap];0.85[JPT][hapmap];0.81[MEX][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs654537	0.90[EUR][1000 genomes]
rs656214	0.85[CEU][hapmap]
rs661713	1.00[ASW][hapmap];0.87[CEU][hapmap];0.91[GIH][hapmap];0.85[JPT][hapmap];0.81[MEX][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs673780	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9111	1.00[ASW][hapmap];0.82[CEU][hapmap]
rs9294458	0.89[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
BACH2	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 2)

eQTL related gene	Source
GABRR2	SCAN
CDKL1	SCAN