SNP Report
Basic Infomation
| Name | rs59587246 dbSNP |
|---|---|
| Location | chr:1,200939509 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10920104 | 1.00[EUR][1000 genomes] |
| rs1536128 | 1.00[EUR][1000 genomes] |
| rs16847468 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16847518 | 1.00[EUR][1000 genomes] |
| rs16847530 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16847659 | 1.00[EUR][1000 genomes] |
| rs16847900 | 1.00[EUR][1000 genomes] |
| rs16847903 | 1.00[EUR][1000 genomes] |
| rs4304621 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55900249 | 1.00[EUR][1000 genomes] |
| rs56403852 | 1.00[EUR][1000 genomes] |
| rs58696905 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60009922 | 1.00[EUR][1000 genomes] |
| rs60370353 | 1.00[EUR][1000 genomes] |
| rs60533026 | 1.00[EUR][1000 genomes] |
| rs60807321 | 1.00[EUR][1000 genomes] |
| rs61022937 | 1.00[EUR][1000 genomes] |
| rs61238538 | 1.00[EUR][1000 genomes] |
| rs61740468 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74136283 | 1.00[EUR][1000 genomes] |
| rs74136284 | 1.00[EUR][1000 genomes] |
| rs74136298 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74136306 | 1.00[EUR][1000 genomes] |
| rs74136314 | 1.00[EUR][1000 genomes] |
| rs74136316 | 1.00[EUR][1000 genomes] |
| rs74136317 | 1.00[EUR][1000 genomes] |
| rs74136319 | 1.00[EUR][1000 genomes] |
| rs74136323 | 1.00[EUR][1000 genomes] |
| rs74138813 | 1.00[EUR][1000 genomes] |
| rs74138814 | 1.00[EUR][1000 genomes] |
| rs7541591 | 1.00[EUR][1000 genomes] |
| rs958289 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KIF21B | Proximal transcriptional regulation |
| C1orf106 | Distal transcriptional regulation |
| ASCL5 | Distal transcriptional regulation |
| KIF21B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014