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rVarBase
SNP Report
Basic Infomation
Name
rs59541087  
dbSNP
Location
chr:1,201347507
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12035254
1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12035335
1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12082220
1.00[AMR][1000 genomes]
rs2275862
1.00[EUR][1000 genomes]
rs28364651
1.00[EUR][1000 genomes]
rs3767523
1.00[EUR][1000 genomes]
rs45527945
1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57029838
1.00[AMR][1000 genomes]
rs57617895
1.00[EUR][1000 genomes]
rs59086347
1.00[AMR][1000 genomes]
rs59827660
1.00[AMR][1000 genomes]
rs61152003
1.00[EUR][1000 genomes]
rs61206974
1.00[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
TNNT2
Proximal transcriptional regulation
LAD1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)