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rVarBase
SNP Report
Basic Infomation
Name
rs57029838  
dbSNP
Location
chr:1,201319769
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12035254
1.00[AMR][1000 genomes]
rs12035335
1.00[AMR][1000 genomes]
rs12082220
1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs45527945
1.00[AMR][1000 genomes]
rs56046473
0.84[ASN][1000 genomes]
rs56069235
0.84[ASN][1000 genomes]
rs57617895
0.81[ASN][1000 genomes]
rs58870432
1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59086347
1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59541087
1.00[AMR][1000 genomes]
rs59827660
1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61152003
0.81[ASN][1000 genomes]
rs61206974
0.81[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
PKP1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)