SNP Report
Basic Infomation
| Name | rs59522753 dbSNP |
|---|---|
| Location | chr:7,116907843 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10235008 | 0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs10241082 | 0.89[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs10262178 | 0.89[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs10272540 | 0.89[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs2106894 | 0.89[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs2270206 | 0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4403349 | 0.90[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs55712256 | 0.89[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs57237256 | 0.88[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs59383324 | 0.89[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs718736 | 0.80[AFR][1000 genomes] |
| rs718737 | 0.89[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs7786419 | 0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs9918524 | 0.89[AFR][1000 genomes];0.82[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000230605 | Proximal transcriptional regulation |
| ENSG00000230785 | Proximal transcriptional regulation |
| TES | Distal transcriptional regulation |
| ST7 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014