SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 13)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs3848726	0.83[ASN][1000 genomes]
rs3918250	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3918254	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3918275	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58845067	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59997378	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73622639	0.84[ASN][1000 genomes]
rs73622640	0.83[ASN][1000 genomes]
rs73622641	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73622642	1.00[EUR][1000 genomes]
rs73622643	1.00[AMR][1000 genomes]
rs73622644	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73622648	0.94[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
MMP9	Proximal transcriptional regulation
MMP9	Distal transcriptional regulation
ENSG00000203346	Distal transcriptional regulation
NCOA5	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)