SNP Report
Basic Infomation
| Name | rs3918254 dbSNP |
|---|---|
| Location | chr:20,44640391 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs3737063 | 0.90[GIH][hapmap] |
| rs3848726 | 0.81[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs3918250 | 1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3918275 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs58748252 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs58845067 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs59997378 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6094237 | 0.88[JPT][hapmap] |
| rs73622639 | 0.83[ASN][1000 genomes] |
| rs73622640 | 0.82[ASN][1000 genomes] |
| rs73622641 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs73622642 | 1.00[EUR][1000 genomes] |
| rs73622644 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs73622648 | 0.92[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000203346 | Proximal transcriptional regulation |
| SLC12A5 | Distal transcriptional regulation |
| ENSG00000204044 | Distal transcriptional regulation |
| ENSG00000240742 | Distal transcriptional regulation |
| NCOA5 | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| ZNF335 | Distal transcriptional regulation |
| MMP9 | Distal transcriptional regulation |
| MMP9 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014