SNP Report
Basic Infomation
| Name | rs574918 dbSNP |
|---|---|
| Location | chr:12,40357647 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506139 | 0.90[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs10784283 | 0.91[GIH][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap] |
| rs11564120 | 0.91[GIH][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes] |
| rs11564226 | 0.85[EUR][1000 genomes] |
| rs11564284 | 0.90[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs1497048 | 0.91[GIH][hapmap];0.91[MKK][hapmap];0.90[TSI][hapmap] |
| rs2132746 | 0.81[EUR][1000 genomes] |
| rs2404351 | 0.91[GIH][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap] |
| rs28370798 | 0.95[ASN][1000 genomes] |
| rs35985096 | 0.85[EUR][1000 genomes] |
| rs6581439 | 0.91[GIH][hapmap];0.91[MKK][hapmap];0.90[TSI][hapmap] |
| rs73092233 | 0.95[ASN][1000 genomes] |
| rs937385 | 0.91[GIH][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | Distal transcriptional regulation |
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| SLC28A2 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014