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rVarBase
SNP Report
Basic Infomation
Name
rs28370798  
dbSNP
Location
chr:12,40344206
Allele
G/T
LD-proxy of rSNPs(r
2
>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10506139
1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11564225
1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11564284
1.00[CEU][hapmap];0.95[ASN][1000 genomes]
rs1390953
1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs574918
0.95[ASN][1000 genomes]
rs61446784
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73092233
1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73092243
1.00[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
SLC2A13
Proximal transcriptional regulation
SLC2A13
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)