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rVarBase
SNP Report
Basic Infomation
Name
rs57040947  
dbSNP
Location
chr:12,49304685
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11547436
0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11831294
0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs17175174
0.84[EUR][1000 genomes]
rs2228417
0.80[EUR][1000 genomes]
rs58829932
0.98[EUR][1000 genomes]
rs58861845
0.96[EUR][1000 genomes]
rs833482
1.00[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
ARF3
RNA binding protein mediated regulation
CCDC65
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)