SNP Report
Basic Infomation
| Name | rs2228417 dbSNP |
|---|---|
| Location | chr:12,49333799 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10783288 | 1.00[JPT][hapmap] |
| rs10875884 | 1.00[JPT][hapmap] |
| rs11547436 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11831294 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12814406 | 0.81[AFR][1000 genomes] |
| rs17175174 | 1.00[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs2453477 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs57040947 | 0.80[EUR][1000 genomes] |
| rs58829932 | 0.82[EUR][1000 genomes] |
| rs58861845 | 0.80[EUR][1000 genomes] |
| rs7959831 | 1.00[CHD][hapmap] |
| rs833477 | 1.00[JPT][hapmap] |
| rs833480 | 1.00[JPT][hapmap] |
| rs833482 | 1.00[JPT][hapmap] |
| rs833836 | 1.00[CHD][hapmap] |
| rs855723 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000255863 | Proximal transcriptional regulation |
| RND1 | Distal transcriptional regulation |
| ARF3 | Distal transcriptional regulation |
| ARF3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014