SNP Report
Basic Infomation
| Name | rs566908 dbSNP |
|---|---|
| Location | chr:11,64837370 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10895987 | 1.00[JPT][hapmap] |
| rs11227118 | 1.00[YRI][hapmap] |
| rs11227126 | 1.00[JPT][hapmap] |
| rs11227136 | 1.00[JPT][hapmap] |
| rs11231929 | 0.86[ASW][hapmap];1.00[YRI][hapmap] |
| rs1196048 | 0.87[ASW][hapmap] |
| rs12280510 | 1.00[JPT][hapmap] |
| rs12292693 | 1.00[JPT][hapmap] |
| rs2282498 | 1.00[YRI][hapmap] |
| rs3802936 | 1.00[YRI][hapmap] |
| rs471538 | 0.86[ASW][hapmap];1.00[MKK][hapmap] |
| rs477539 | 1.00[YRI][hapmap] |
| rs489489 | 0.87[ASW][hapmap] |
| rs548150 | 0.87[ASW][hapmap] |
| rs564966 | 1.00[YRI][hapmap] |
| rs7113761 | 1.00[JPT][hapmap] |
| rs72932837 | 0.83[ASN][1000 genomes] |
| rs7943007 | 1.00[YRI][hapmap] |
| rs9971407 | 1.00[JPT][hapmap] |
| rs9971546 | 1.00[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDCA5 | Proximal transcriptional regulation |
| NAALADL1 | Distal transcriptional regulation |
| ENSG00000255173 | Distal transcriptional regulation |
| ZNHIT2 | Distal transcriptional regulation |
| ARL2 | Distal transcriptional regulation |
| SNX15 | Distal transcriptional regulation |
| SAC3D1 | Distal transcriptional regulation |
| VPS51 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014