SNP Report
Basic Infomation
| Name | rs12292693 dbSNP |
|---|---|
| Location | chr:11,64936719 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10895987 | 0.89[ASW][hapmap];0.85[CEU][hapmap];0.82[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.92[MEX][hapmap];0.90[TSI][hapmap];0.88[YRI][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10895989 | 0.81[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11227126 | 0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11227136 | 0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12280510 | 0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12289048 | 0.80[AFR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12365171 | 0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs566908 | 1.00[JPT][hapmap] |
| rs7113761 | 1.00[ASW][hapmap];0.85[CEU][hapmap];0.82[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.92[MEX][hapmap];0.90[TSI][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7114094 | 0.80[AFR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9971407 | 0.87[ASW][hapmap];0.85[CEU][hapmap];0.82[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.92[MEX][hapmap];0.83[TSI][hapmap];0.87[YRI][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPDYC | Proximal transcriptional regulation |
| EHD1 | Distal transcriptional regulation |
| CDCA5 | Distal transcriptional regulation |
| ZFPL1 | Distal transcriptional regulation |
| ENSG00000254501 | Distal transcriptional regulation |
| TM7SF2 | Distal transcriptional regulation |
| ENSG00000255173 | Distal transcriptional regulation |
| ZNHIT2 | Distal transcriptional regulation |
| FAU | Distal transcriptional regulation |
| MRPL49 | Distal transcriptional regulation |
| SYVN1 | Distal transcriptional regulation |
| HIGD1AP10 | Distal transcriptional regulation |
| ENSG00000222477 | Distal transcriptional regulation |
| MALAT1 | Distal transcriptional regulation |
| ENSG00000270117 | Distal transcriptional regulation |
| SAC3D1 | Distal transcriptional regulation |
| CDC42EP2 | Distal transcriptional regulation |
| CAPN1 | Distal transcriptional regulation |
| VPS51 | Distal transcriptional regulation |
| ENSG00000254614 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| LOC387778 | Pritchard |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014