SNP Report
Basic Infomation
| Name | rs55990521 dbSNP |
|---|---|
| Location | chr:14,69077442 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs17106005 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17106008 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17106011 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17106012 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17756585 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs17756627 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs17834971 | 0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4902615 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4902619 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs4902620 | 0.81[AMR][1000 genomes] |
| rs56104115 | 0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58015193 | 0.84[ASN][1000 genomes] |
| rs7153168 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7153395 | 0.87[ASN][1000 genomes] |
| rs72729553 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs72729557 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000259038 | Distal transcriptional regulation |
| ZFP36L1 | Distal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014