SNP Report
Basic Infomation
| Name | rs55885232 dbSNP |
|---|---|
| Location | chr:14,69282512 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10139199 | 1.00[ASN][1000 genomes] |
| rs12147199 | 0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12147461 | 0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17757282 | 0.81[AMR][1000 genomes] |
| rs1898320 | 1.00[ASN][1000 genomes] |
| rs2164627 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4899260 | 1.00[ASN][1000 genomes] |
| rs4899262 | 1.00[ASN][1000 genomes] |
| rs4902649 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58638884 | 0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72731526 | 0.81[AMR][1000 genomes] |
| rs72731527 | 0.81[AMR][1000 genomes] |
| rs72731529 | 0.81[AMR][1000 genomes] |
| rs72731531 | 0.87[AMR][1000 genomes] |
| rs72731532 | 0.84[AMR][1000 genomes] |
| rs72731535 | 0.84[AMR][1000 genomes] |
| rs72731537 | 0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72731538 | 0.84[AMR][1000 genomes] |
| rs72731539 | 0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72731554 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72731565 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs735292 | 0.87[AMR][1000 genomes] |
| rs8019383 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SNAI1 | Distal transcriptional regulation |
| RAD51B | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014