SNP Report
Basic Infomation
| Name | rs4899213 dbSNP |
|---|---|
| Location | chr:14,68068075 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10133858 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10134513 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11849600 | 1.00[EUR][1000 genomes] |
| rs12892280 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2234515 | 1.00[EUR][1000 genomes] |
| rs28417709 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28521930 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28629772 | 1.00[AMR][1000 genomes] |
| rs28705873 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs45462391 | 1.00[EUR][1000 genomes] |
| rs45584632 | 1.00[EUR][1000 genomes] |
| rs7154825 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7154887 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7160492 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PIGH | Proximal transcriptional regulation |
| RDH11 | Distal transcriptional regulation |
| VTI1B | Distal transcriptional regulation |
| ENSG00000201529 | Distal transcriptional regulation |
| PLEKHH1 | Distal transcriptional regulation |
| ENSG00000266117 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014