SNP Report
Basic Infomation
| Name | rs11849600 dbSNP |
|---|---|
| Location | chr:14,68085681 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10133858 | 1.00[EUR][1000 genomes] |
| rs10134513 | 1.00[EUR][1000 genomes] |
| rs10145923 | 1.00[MEX][hapmap] |
| rs10146242 | 1.00[MEX][hapmap] |
| rs12100644 | 1.00[CEU][hapmap] |
| rs12892280 | 1.00[EUR][1000 genomes] |
| rs2234515 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs28417709 | 1.00[EUR][1000 genomes] |
| rs28521930 | 1.00[EUR][1000 genomes] |
| rs28705873 | 1.00[EUR][1000 genomes] |
| rs45462391 | 1.00[EUR][1000 genomes] |
| rs45584632 | 1.00[EUR][1000 genomes] |
| rs4899213 | 1.00[EUR][1000 genomes] |
| rs4899216 | 0.83[AMR][1000 genomes] |
| rs4899220 | 1.00[CEU][hapmap] |
| rs4902504 | 0.83[AMR][1000 genomes] |
| rs4902516 | 1.00[MEX][hapmap] |
| rs7143223 | 1.00[MEX][hapmap] |
| rs7154825 | 1.00[EUR][1000 genomes] |
| rs7154887 | 1.00[EUR][1000 genomes] |
| rs7156195 | 1.00[MEX][hapmap] |
| rs7160492 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7765 | 1.00[MEX][hapmap] |
| rs8015003 | 1.00[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ARG2 | Proximal transcriptional regulation |
| ENSG00000201529 | Proximal transcriptional regulation |
| ENSG00000259648 | Distal transcriptional regulation |
| RDH11 | Distal transcriptional regulation |
| VTI1B | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014