SNP Report
Basic Infomation
| Name | rs45568336 dbSNP |
|---|---|
| Location | chr:20,44644379 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11569301 | 1.00[EUR][1000 genomes] |
| rs2024569 | 1.00[EUR][1000 genomes] |
| rs28763885 | 0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28763886 | 0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35342327 | 1.00[EUR][1000 genomes] |
| rs55919601 | 1.00[EUR][1000 genomes] |
| rs58539546 | 1.00[EUR][1000 genomes] |
| rs6017736 | 1.00[EUR][1000 genomes] |
| rs6032710 | 1.00[EUR][1000 genomes] |
| rs6094257 | 1.00[EUR][1000 genomes] |
| rs6104467 | 1.00[EUR][1000 genomes] |
| rs61555823 | 1.00[EUR][1000 genomes] |
| rs7270001 | 1.00[EUR][1000 genomes] |
| rs73911124 | 1.00[EUR][1000 genomes] |
| rs73911129 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZNF335 | Distal transcriptional regulation |
| MMP9 | Distal transcriptional regulation |
| NCOA5 | Distal transcriptional regulation |
| SLC12A5 | Distal transcriptional regulation |
| ENSG00000204044 | Distal transcriptional regulation |
| ENSG00000240742 | Distal transcriptional regulation |
| ENSG00000204044 | RNA binding protein mediated regulation |
| MMP9 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014