SNP Report
Basic Infomation
| Name | rs4533100 dbSNP |
|---|---|
| Location | chr:12,40161497 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 63)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10444571 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10444572 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10747879 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10784058 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11833798 | 1.00[ASN][1000 genomes] |
| rs4238071 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4238074 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4238075 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4238077 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4238078 | 0.95[EUR][1000 genomes] |
| rs4267135 | 0.95[EUR][1000 genomes] |
| rs4268570 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4321021 | 0.95[EUR][1000 genomes] |
| rs4322462 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4334097 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4334098 | 1.00[ASN][1000 genomes] |
| rs4334099 | 1.00[ASN][1000 genomes] |
| rs4374002 | 1.00[ASN][1000 genomes] |
| rs4391873 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4397917 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4426190 | 0.94[EUR][1000 genomes] |
| rs4427625 | 0.95[EUR][1000 genomes] |
| rs4435073 | 1.00[ASN][1000 genomes] |
| rs4447240 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4450227 | 1.00[ASN][1000 genomes] |
| rs4488272 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4511345 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4529945 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4540893 | 1.00[ASN][1000 genomes] |
| rs4544077 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4561275 | 1.00[ASN][1000 genomes] |
| rs4576894 | 0.81[EUR][1000 genomes] |
| rs4583047 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4639999 | 0.95[EUR][1000 genomes] |
| rs4767953 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4768178 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4768180 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4768181 | 0.95[EUR][1000 genomes] |
| rs4768182 | 0.95[EUR][1000 genomes] |
| rs58338462 | 1.00[ASN][1000 genomes] |
| rs6581321 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6581325 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6581326 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6581336 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6581337 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6581338 | 0.95[EUR][1000 genomes] |
| rs6581346 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7133037 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7135021 | 1.00[ASN][1000 genomes] |
| rs7135047 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7297063 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7299595 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7300946 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7302571 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7303581 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7310917 | 0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7956254 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7961216 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7967347 | 1.00[ASN][1000 genomes] |
| rs7969296 | 0.95[EUR][1000 genomes] |
| rs7973782 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7975209 | 0.95[EUR][1000 genomes] |
| rs9645805 | 0.95[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C12orf40 | RNA binding protein mediated regulation |
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014