SNP Report
Basic Infomation
| Name | rs424908 dbSNP |
|---|---|
| Location | chr:16,11369534 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1424089 | 0.87[AFR][1000 genomes] |
| rs1794020 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2032928 | 1.00[AMR][1000 genomes] |
| rs243316 | 0.84[ASW][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs2550476 | 1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs370884 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs397750 | 1.00[AMR][1000 genomes] |
| rs406111 | 1.00[AMR][1000 genomes] |
| rs413643 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4781063 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs481549 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7184280 | 1.00[AMR][1000 genomes] |
| rs7193797 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8062976 | 1.00[AMR][1000 genomes] |
| rs889649 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs918741 | 1.00[ASW][hapmap];0.89[MKK][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9922790 | 1.00[AMR][1000 genomes] |
| rs9926900 | 1.00[ASW][hapmap];0.83[LWK][hapmap];1.00[MKK][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs9927945 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRM2 | Proximal transcriptional regulation |
| PRM3 | Proximal transcriptional regulation |
| ENSG00000212228 | Proximal transcriptional regulation |
| TNP2 | Distal transcriptional regulation |
| PRM3 | Distal transcriptional regulation |
| ENSG00000212228 | Distal transcriptional regulation |
| SOCS1 | Distal transcriptional regulation |
| RMI2 | RNA binding protein mediated regulation |
| PRM2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| TARP | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014