SNP Report
Basic Infomation
| Name | rs243316 dbSNP |
|---|---|
| Location | chr:16,11384741 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1794020 | 1.00[AMR][1000 genomes] |
| rs2032928 | 1.00[AMR][1000 genomes] |
| rs2550476 | 0.84[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs370884 | 1.00[AMR][1000 genomes] |
| rs397750 | 1.00[AMR][1000 genomes] |
| rs406111 | 1.00[AMR][1000 genomes] |
| rs413643 | 1.00[AMR][1000 genomes] |
| rs424908 | 0.84[ASW][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs4781063 | 1.00[AMR][1000 genomes] |
| rs481549 | 0.84[ASW][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs7184280 | 1.00[AMR][1000 genomes] |
| rs7193797 | 1.00[AMR][1000 genomes] |
| rs8062976 | 1.00[AMR][1000 genomes] |
| rs889649 | 1.00[AMR][1000 genomes] |
| rs918741 | 0.84[ASW][hapmap];1.00[AMR][1000 genomes] |
| rs9922790 | 1.00[AMR][1000 genomes] |
| rs9926900 | 0.84[ASW][hapmap];1.00[AMR][1000 genomes] |
| rs9927945 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000238409 | Proximal transcriptional regulation |
| PRM3 | Distal transcriptional regulation |
| ENSG00000212228 | Distal transcriptional regulation |
| RMI2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| TARP | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014