SNP Report
Basic Infomation
| Name | rs408608 dbSNP |
|---|---|
| Location | chr:14,69181429 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1034485 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs11158760 | 0.83[AFR][1000 genomes] |
| rs168964 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs194773 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs194781 | 0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs194782 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs381336 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs383721 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs387618 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs404539 | 0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs405329 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs409633 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs412016 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs440489 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs444883 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFP36L1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014