SNP Report
Basic Infomation
| Name | rs38906 dbSNP |
|---|---|
| Location | chr:7,116894865 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10235008 | 0.85[ASN][1000 genomes] |
| rs10241082 | 0.90[ASN][1000 genomes] |
| rs10262178 | 0.89[ASN][1000 genomes] |
| rs10272540 | 0.85[ASN][1000 genomes] |
| rs38904 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs38905 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs38907 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs38908 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs38910 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs38911 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4282508 | 0.82[ASN][1000 genomes] |
| rs4403349 | 0.91[ASN][1000 genomes] |
| rs4587271 | 0.82[ASN][1000 genomes] |
| rs4612282 | 0.91[ASN][1000 genomes] |
| rs4632997 | 0.82[ASN][1000 genomes] |
| rs55712256 | 0.93[ASN][1000 genomes] |
| rs56863440 | 0.81[ASN][1000 genomes] |
| rs57237256 | 0.91[ASN][1000 genomes] |
| rs59383324 | 0.90[ASN][1000 genomes] |
| rs66547623 | 0.91[ASN][1000 genomes] |
| rs718737 | 0.85[ASN][1000 genomes] |
| rs7786419 | 0.82[ASN][1000 genomes] |
| rs9656249 | 0.82[ASN][1000 genomes] |
rSNP related genes
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014