SNP Report
Basic Infomation
| Name | rs3825071 dbSNP |
|---|---|
| Location | chr:11,65212122 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1075692 | 0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10896005 | 0.82[ASN][1000 genomes] |
| rs10896006 | 0.82[ASN][1000 genomes] |
| rs10896008 | 0.84[ASN][1000 genomes] |
| rs10896009 | 0.84[ASN][1000 genomes] |
| rs10896010 | 0.84[ASN][1000 genomes] |
| rs11227196 | 0.82[ASN][1000 genomes] |
| rs11227197 | 0.82[ASN][1000 genomes] |
| rs11227199 | 0.82[ASN][1000 genomes] |
| rs11227201 | 0.84[ASN][1000 genomes] |
| rs11227202 | 0.84[ASN][1000 genomes] |
| rs11227205 | 0.83[ASN][1000 genomes] |
| rs12269965 | 0.82[ASN][1000 genomes] |
| rs12269975 | 0.82[ASN][1000 genomes] |
| rs12294910 | 0.82[ASN][1000 genomes] |
| rs12360896 | 0.81[ASN][1000 genomes] |
| rs12364730 | 0.82[ASN][1000 genomes] |
| rs12788055 | 0.80[ASN][1000 genomes] |
| rs12803915 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12808303 | 0.84[ASN][1000 genomes] |
| rs17146964 | 0.84[ASN][1000 genomes] |
| rs2096560 | 0.87[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2508710 | 0.82[ASN][1000 genomes] |
| rs34527830 | 0.82[ASN][1000 genomes] |
| rs34582634 | 0.84[ASN][1000 genomes] |
| rs34877911 | 0.82[ASN][1000 genomes] |
| rs35292734 | 0.82[ASN][1000 genomes] |
| rs35469818 | 0.82[ASN][1000 genomes] |
| rs35826299 | 0.84[ASN][1000 genomes] |
| rs57311037 | 0.84[ASN][1000 genomes] |
| rs7128776 | 0.84[ASN][1000 genomes] |
| rs7931615 | 0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000173727 | Distal transcriptional regulation |
| MALAT1 | Distal transcriptional regulation |
| ENSG00000270117 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014