SNP Report
Name | rs34857922   dbSNP |
---|---|
Location | chr:1,114420760 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10127930 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs10489936 | 0.81[EUR][1000 genomes] |
rs1080307 | 0.86[AFR][1000 genomes];0.82[EUR][1000 genomes] |
rs1217384 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12729708 | 0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs12730735 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12734625 | 1.00[AFR][1000 genomes];0.84[EUR][1000 genomes] |
rs12735104 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs12748727 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12752932 | 0.84[EUR][1000 genomes] |
rs12753351 | 0.82[EUR][1000 genomes] |
rs12758546 | 0.86[AFR][1000 genomes];0.82[EUR][1000 genomes] |
rs12760457 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs13374352 | 1.00[AFR][1000 genomes];0.82[EUR][1000 genomes] |
rs17274550 | 0.82[EUR][1000 genomes] |
rs17274620 | 0.86[AFR][1000 genomes];0.82[EUR][1000 genomes] |
rs17274634 | 0.82[EUR][1000 genomes] |
rs17359302 | 0.82[EUR][1000 genomes] |
rs17462614 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs17509390 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs1885454 | 0.86[AFR][1000 genomes];0.82[EUR][1000 genomes] |
rs2040040 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs2359173 | 0.82[EUR][1000 genomes] |
rs2359174 | 0.82[EUR][1000 genomes] |
rs34042871 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs34341173 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs34649199 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs34877889 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs35320278 | 0.82[EUR][1000 genomes] |
rs35836713 | 0.82[EUR][1000 genomes] |
rs36115604 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs3747998 | 0.82[EUR][1000 genomes] |
rs3748003 | 0.82[EUR][1000 genomes] |
rs3761931 | 0.81[EUR][1000 genomes] |
rs3789595 | 0.82[EUR][1000 genomes] |
rs3789607 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs3789609 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs61817586 | 1.00[AFR][1000 genomes];0.85[EUR][1000 genomes] |
rs61817617 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs61820162 | 0.82[EUR][1000 genomes] |
rs6668829 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs6674848 | 1.00[AFR][1000 genomes];0.84[EUR][1000 genomes] |
rs6703387 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs7533391 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs7533605 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs7549685 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs7555354 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
AP4B1 | Distal transcriptional regulation |
DCLRE1B | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014