SNP Report
Basic Infomation
| Name | rs34106427 dbSNP |
|---|---|
| Location | chr:1,154813988 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11586348 | 0.81[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11588763 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12128882 | 0.94[ASN][1000 genomes] |
| rs1218566 | 0.88[ASN][1000 genomes] |
| rs1218576 | 0.94[ASN][1000 genomes] |
| rs12754189 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13376333 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13376345 | 0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs34292822 | 0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34515871 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs36004974 | 0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs61150523 | 0.94[ASN][1000 genomes] |
| rs6426985 | 0.94[ASN][1000 genomes] |
| rs6426986 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6426987 | 0.94[ASN][1000 genomes] |
| rs6426988 | 0.94[ASN][1000 genomes] |
| rs6658392 | 0.80[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6666258 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6666891 | 0.82[EUR][1000 genomes] |
| rs6691463 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6691945 | 0.80[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6704241 | 0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6704449 | 0.94[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PMVK | Distal transcriptional regulation |
| KCNN3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014